1 HAMP#1
277-349 aa · 73 aa · 12.6% of protein
Raw token
HAMP:277:0.0000231:349:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGT68_RS01135
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_027671305
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027671305#PGT68_RS01135Stable P2CS identifier used across views.
GenomeGCF_027671305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 580 aa (45.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:365:7.72e-21:443:79:803 HATPase_c#3
461-569 aa · 109 aa · 18.8% of protein
Raw token
HATPase_c:461:0.0000000196:569:116:109- Raw architecture: HAMP:277:0.0000231:349:73:69#His_kinase:365:7.72e-21:443:79:80#HATPase_c:461:0.0000000196:569:116:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027671305::NZ_JAQEAM010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span244197-247512Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027671305::NZ_JAQEAM010000001.1::G00004Context members
PGT68_RS01130PGT68_RS01135
Partner locus tags
PGT68_RS01130PGT68_RS01135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118660054.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGT68_RS01135Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEAM010000001.1Sequence record reported by the local genomic context database.
Genomic interval245 770-247 512 nt1 743 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span244 197-247 512 ntGCF_027671305::NZ_JAQEAM010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027671305::NZ_JAQEAM010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEAM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span244 197-247 512 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 197 nt247 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGT68_RS01130GCF_027671305#PGT68_RS01130
RRunclassified
244 197-245 792 nt · Reverse (-)
PGT68_RS01135GCF_027671305#PGT68_RS01135
HKClassicCurrent focus
245 770-247 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479105#DWX32_RS10730Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163160
Simplified PFAM architecture for HKOC_1163160
PFAM domain coverage: 186 / 580 aa (32.1%)
1 aa580 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-443] | HATPase_c[462-568]
- Domain count: 2
- Matched identifier: HKOC_1163160
- Positioned domains: His_kinase 365-443 ; HATPase_c 462-568
Cluster members and taxonomy
Representative gene: GCF_003479105#DWX32_RS10730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027671305
AssemblyASM2767130v1 · Scaffoldhaploid
Genome composition3 754 787 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 102 · HK 50 · RR 49CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key