1 Response_reg#1
3-115 aa · 113 aa · 54.9% of protein
Raw token
Response_reg:3:3.79e-18:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA41_RS05040
Response regulator NarL family
Bifidobacterium adolescentis · GCF_027669735
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027669735#PHA41_RS05040Stable P2CS identifier used across views.
GenomeGCF_027669735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 206 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-199 aa · 56 aa · 27.2% of protein
Raw token
HTH_LUXR:144:7.08e-18:199:56:58- Raw architecture: Response_reg:3:3.79e-18:115:114:111#HTH_LUXR:144:7.08e-18:199:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027669735::NZ_JAQECY010000003.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span176823-177443Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027669735::NZ_JAQECY010000003.1::G00011Context members
PHA41_RS05040
Partner locus tags
PHA41_RS05040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270319670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA41_RS05040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQECY010000003.1Sequence record reported by the local genomic context database.
Genomic interval176 823-177 443 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176 823-177 443 ntGCF_027669735::NZ_JAQECY010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027669735::NZ_JAQECY010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQECY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span176 823-177 443 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 823 nt177 443 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PHA41_RS05040GCF_027669735#PHA41_RS05040
RRNarLCurrent focus
176 823-177 443 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027669735#PHA41_RS05040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2086651
Simplified PFAM architecture for RROC_2086651
PFAM domain coverage: 165 / 206 aa (80.1%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-114] | GerE[146-198]
- Domain count: 2
- Matched identifier: RROC_2086651
- Positioned domains: Response_reg 3-114 ; GerE 146-198
Cluster members and taxonomy
Representative gene: GCF_027669735#PHA41_RS05040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_027669735
AssemblyASM2766973v1 · Scaffoldhaploid
Genome composition2 220 082 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 12 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key