1 Response_reg#1
5-91 aa · 87 aa · 36.7% of protein
Raw token
Response_reg:5:0.00000000249:91:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS12685
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027668845#PHA32_RS12685Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 237 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
142-229 aa · 88 aa · 37.1% of protein
Raw token
LytTR:142:0.00000000000000269:229:90:98- Raw architecture: Response_reg:5:0.00000000249:91:89:111#LytTR:142:0.00000000000000269:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027668845::NZ_JAQEDZ010000019.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45035-45748Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000019.1::G00016Context members
PHA32_RS12685
Partner locus tags
PHA32_RS12685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270843306.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS12685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000019.1Sequence record reported by the local genomic context database.
Genomic interval45 035-45 748 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 035-45 748 ntGCF_027668845::NZ_JAQEDZ010000019.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000019.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000019.1All displayed genes belong to this local TCS context.
Neighborhood span45 035-45 748 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 035 nt45 748 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PHA32_RS12685GCF_027668845#PHA32_RS12685
RRLytTRCurrent focus
45 035-45 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS12685The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0977578
Simplified PFAM architecture for RROC_0977578
PFAM domain coverage: 92 / 237 aa (38.8%)
1 aa237 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[138-229]
- Domain count: 1
- Matched identifier: RROC_0977578
- Positioned domains: LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS12685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key