1 Response_reg#1
4-114 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:4:2.39e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS12340
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027668845#PHA32_RS12340Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:144:5.23e-27:219:78:77- Raw architecture: Response_reg:4:2.39e-29:114:111:111#Trans_reg_C:144:5.23e-27:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027668845::NZ_JAQEDZ010000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51504-53154Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000018.1::G00015Context members
PHA32_RS12335PHA32_RS12340
Partner locus tags
PHA32_RS12335PHA32_RS12340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117864966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS12340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000018.1Sequence record reported by the local genomic context database.
Genomic interval52 483-53 154 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 504-53 154 ntGCF_027668845::NZ_JAQEDZ010000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000018.1All displayed genes belong to this local TCS context.
Neighborhood span51 504-53 154 nt1 651 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 504 nt53 154 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PHA32_RS12335GCF_027668845#PHA32_RS12335
HKClassic
51 504-52 490 nt · Reverse (-)
PHA32_RS12340GCF_027668845#PHA32_RS12340
RROmpRCurrent focus
52 483-53 154 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS12340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1616342
Simplified PFAM architecture for RROC_1616342
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1616342
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS12340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key