1 Response_reg#1
4-115 aa · 112 aa · 49.6% of protein
Raw token
Response_reg:4:3.06e-31:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS11940
Response regulator NarL family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027668845#PHA32_RS11940Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 226 aa (73.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
157-211 aa · 55 aa · 24.3% of protein
Raw token
HTH_LUXR:157:3.55e-19:211:55:58- Raw architecture: Response_reg:4:3.06e-31:115:112:111#HTH_LUXR:157:3.55e-19:211:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027668845::NZ_JAQEDZ010000017.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46453-48427Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000017.1::G00014Context members
PHA32_RS11935PHA32_RS11940
Partner locus tags
PHA32_RS11935PHA32_RS11940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117481690.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS11940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000017.1Sequence record reported by the local genomic context database.
Genomic interval47 747-48 427 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 453-48 427 ntGCF_027668845::NZ_JAQEDZ010000017.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000017.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000017.1All displayed genes belong to this local TCS context.
Neighborhood span46 453-48 427 nt1 975 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 453 nt48 427 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PHA32_RS11935GCF_027668845#PHA32_RS11935
HKClassic
46 453-47 754 nt · Forward (+)
PHA32_RS11940GCF_027668845#PHA32_RS11940
RRNarLCurrent focus
47 747-48 427 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669615#I4U79_RS10980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1430897
Simplified PFAM architecture for RROC_1430897
PFAM domain coverage: 167 / 226 aa (73.9%)
1 aa226 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[157-211]
- Domain count: 2
- Matched identifier: RROC_1430897
- Positioned domains: Response_reg 4-115 ; GerE 157-211
Cluster members and taxonomy
Representative gene: GCF_015669615#I4U79_RS10980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key