1 Response_reg#1
3-105 aa · 103 aa · 46.4% of protein
Raw token
Response_reg:3:0.000000000000254:105:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS10640
Response regulator LytTR family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeLytTRLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027668845#PHA32_RS10640Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 222 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 LytTR#2
127-208 aa · 82 aa · 36.9% of protein
Raw token
LytTR:127:0.00000344:208:89:98- Raw architecture: Response_reg:3:0.000000000000254:105:110:111#LytTR:127:0.00000344:208:89:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027668845::NZ_JAQEDZ010000014.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4684-5352Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000014.1::G00010Context members
PHA32_RS10640
Partner locus tags
PHA32_RS10640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117576162.1Primary protein accession used for annex mappings.
UniProt accessionA0A7I8DXN2Primary UniProt accession resolved in the annex database.
UniProt IDA0A7I8DXN2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS10640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000014.1Sequence record reported by the local genomic context database.
Genomic interval4 684-5 352 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 684-5 352 ntGCF_027668845::NZ_JAQEDZ010000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000014.1All displayed genes belong to this local TCS context.
Neighborhood span4 684-5 352 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 684 nt5 352 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PHA32_RS10640GCF_027668845#PHA32_RS10640
RRLytTRCurrent focus
4 684-5 352 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS05310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1653551
Simplified PFAM architecture for RROC_1653551
PFAM domain coverage: 182 / 222 aa (82.0%)
1 aa222 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-100] | LytTR[125-208]
- Domain count: 2
- Matched identifier: RROC_1653551
- Positioned domains: Response_reg 3-100 ; LytTR 125-208
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS05310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key