1 Response_reg#1
8-111 aa · 104 aa · 13.2% of protein
Raw token
Response_reg:8:6.92e-27:111:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS09180
Response regulator, RpfG family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeRpfGLength788 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027668845#PHA32_RS09180Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length788 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage355 / 788 aa (45.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa788 aa
Domain-by-domain annotation3 items
2 HD#2
194-300 aa · 107 aa · 13.6% of protein
Raw token
HD:194:0.00000000000147:300:107:1103 GGDEF#3
634-777 aa · 144 aa · 18.3% of protein
Raw token
GGDEF:634:1.45e-33:777:157:160- Raw architecture: Response_reg:8:6.92e-27:111:105:111#HD:194:0.00000000000147:300:107:110#GGDEF:634:1.45e-33:777:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027668845::NZ_JAQEDZ010000010.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39449-41815Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000010.1::G00007Context members
PHA32_RS09180
Partner locus tags
PHA32_RS09180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158576482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS09180Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000010.1Sequence record reported by the local genomic context database.
Genomic interval39 449-41 815 nt2 367 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 449-41 815 ntGCF_027668845::NZ_JAQEDZ010000010.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000010.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span39 449-41 815 nt2 367 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 449 nt41 815 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PHA32_RS09180GCF_027668845#PHA32_RS09180
RRRpfGCurrent focus
39 449-41 815 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS09180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016670
Simplified PFAM architecture for RROC_0016670
PFAM domain coverage: 382 / 788 aa (48.5%)
1 aa788 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[8-112] | HD_5[189-321] | GGDEF[634-777]
- Domain count: 3
- Matched identifier: RROC_0016670
- Positioned domains: Response_reg 8-112 ; HD_5 189-321 ; GGDEF 634-777
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS09180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key