1 GGDEF#1
113-256 aa · 144 aa · 34.8% of protein
Raw token
GGDEF:113:1.03e-40:256:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS07395
Response regulator, PleD family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypePleDLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027668845#PHA32_RS07395Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_reg
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage249 / 414 aa (60.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 Response_reg#2
278-382 aa · 105 aa · 25.4% of protein
Raw token
Response_reg:278:5.58e-23:382:106:111- Raw architecture: GGDEF:113:1.03e-40:256:156:160#Response_reg:278:5.58e-23:382:106:111
- Domain description: 1 GGDEF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027668845::NZ_JAQEDZ010000007.1::G00036
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span22729-24355Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000007.1::G00036Context members
PHA32_RS07395PHA32_RS07400
Partner locus tags
PHA32_RS07395PHA32_RS07400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022000823.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS07395Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000007.1Sequence record reported by the local genomic context database.
Genomic interval22 729-23 973 nt1 245 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 729-24 355 ntGCF_027668845::NZ_JAQEDZ010000007.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000007.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span22 729-24 355 nt1 627 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 729 nt24 355 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PHA32_RS07395GCF_027668845#PHA32_RS07395
RRPleDCurrent focus
22 729-23 973 nt · Reverse (-)
PHA32_RS07400GCF_027668845#PHA32_RS07400
RRCheY
24 098-24 355 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667095#I4U63_RS01150Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0364525
Simplified PFAM architecture for RROC_0364525
PFAM domain coverage: 251 / 414 aa (60.6%)
1 aa414 aa
GGDEFResponse_reg
- Simplified architecture: GGDEF + Response_reg
- Raw architecture: GGDEF[113-256] | Response_reg[278-384]
- Domain count: 2
- Matched identifier: RROC_0364525
- Positioned domains: GGDEF 113-256 ; Response_reg 278-384
Cluster members and taxonomy
Representative gene: GCF_015667095#I4U63_RS01150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key