1 sCache_like#1
45-129 aa · 85 aa · 15.1% of protein
Raw token
sCache_like:45:0.0000066:129:86:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS04340
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_027668845
ClassHKTypeClassicLength563 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027668845#PHA32_RS04340Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPAS_8HisKAHATPase_c
Protein length563 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage328 / 563 aa (58.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa563 aa
Domain-by-domain annotation5 items
2 HAMP#2
157-193 aa · 37 aa · 6.6% of protein
Raw token
HAMP:157:0.00000159:193:37:693 PAS_8#3
236-268 aa · 33 aa · 5.9% of protein
Raw token
PAS_8:236:0.0000141:268:33:654 HisKA#4
337-403 aa · 67 aa · 11.9% of protein
Raw token
HisKA:337:1.03e-19:403:67:645 HATPase_c#5
452-557 aa · 106 aa · 18.8% of protein
Raw token
HATPase_c:452:2.37e-28:557:107:109- Raw architecture: sCache_like:45:0.0000066:129:86:114#HAMP:157:0.00000159:193:37:69#PAS_8:236:0.0000141:268:33:65#HisKA:337:1.03e-19:403:67:64#HATPase_c:452:2.37e-28:557:107:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027668845::NZ_JAQEDZ010000003.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span200446-202819Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000003.1::G00026Context members
PHA32_RS04335PHA32_RS04340
Partner locus tags
PHA32_RS04335PHA32_RS04340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270842729.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS04340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval201 128-202 819 nt1 692 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span200 446-202 819 ntGCF_027668845::NZ_JAQEDZ010000003.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000003.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span200 446-202 819 nt2 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
200 446 nt202 819 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PHA32_RS04335GCF_027668845#PHA32_RS04335
RROmpR
200 446-201 126 nt · Forward (+)
PHA32_RS04340GCF_027668845#PHA32_RS04340
HKClassicCurrent focus
201 128-202 819 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027668845#PHA32_RS04340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1247194
Simplified PFAM architecture for HKOC_1247194
PFAM domain coverage: 176 / 563 aa (31.3%)
1 aa563 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[337-403] | HATPase_c[450-558]
- Domain count: 2
- Matched identifier: HKOC_1247194
- Positioned domains: HisKA 337-403 ; HATPase_c 450-558
Cluster members and taxonomy
Representative gene: GCF_027668845#PHA32_RS04340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key