1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:4.32e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA32_RS01115
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_027668845
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027668845#PHA32_RS01115Stable P2CS identifier used across views.
GenomeGCF_027668845Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 221 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-219 aa · 77 aa · 34.8% of protein
Raw token
Trans_reg_C:143:6.78e-19:219:80:77- Raw architecture: Response_reg:4:4.32e-33:112:111:111#Trans_reg_C:143:6.78e-19:219:80:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027668845::NZ_JAQEDZ010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212193-213799Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027668845::NZ_JAQEDZ010000001.1::G00003Context members
PHA32_RS01110PHA32_RS01115
Partner locus tags
PHA32_RS01110PHA32_RS01115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270439724.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA32_RS01115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEDZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval213 134-213 799 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span212 193-213 799 ntGCF_027668845::NZ_JAQEDZ010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027668845::NZ_JAQEDZ010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEDZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span212 193-213 799 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 193 nt213 799 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PHA32_RS01110GCF_027668845#PHA32_RS01110
HKClassic
212 193-213 146 nt · Reverse (-)
PHA32_RS01115GCF_027668845#PHA32_RS01115
RROmpRCurrent focus
213 134-213 799 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027682845#PGX96_RS14985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0977593
Simplified PFAM architecture for RROC_0977593
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[20-128] | Trans_reg_C[160-234]
- Domain count: 2
- Matched identifier: RROC_0977593
- Positioned domains: Response_reg 20-128 ; Trans_reg_C 160-234
Cluster members and taxonomy
Representative gene: GCF_027682845#PGX96_RS14985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_027668845
AssemblyASM2766884v1 · Scaffoldhaploid
Genome composition2 903 001 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 57 · HK 21 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key