1 HisKA_3#1
241-303 aa · 63 aa · 7.3% of protein
Raw token
HisKA_3:241:4.67e-18:303:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR13_RS05280
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_027664925
ClassHKTypeClassicLength868 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027664925#PGR13_RS05280Stable P2CS identifier used across views.
GenomeGCF_027664925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length868 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 868 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa868 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-438 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:352:0.000000000000371:438:104:109- Raw architecture: HisKA_3:241:4.67e-18:303:63:68#HATPase_c:352:0.000000000000371:438:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027664925::NZ_JAQDEY010000004.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span226938-230369Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664925::NZ_JAQDEY010000004.1::G00013Context members
PGR13_RS05275PGR13_RS05280
Partner locus tags
PGR13_RS05275PGR13_RS05280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270296024.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR13_RS05280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDEY010000004.1Sequence record reported by the local genomic context database.
Genomic interval227 763-230 369 nt2 607 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span226 938-230 369 ntGCF_027664925::NZ_JAQDEY010000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664925::NZ_JAQDEY010000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDEY010000004.1All displayed genes belong to this local TCS context.
Neighborhood span226 938-230 369 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
226 938 nt230 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR13_RS05275GCF_027664925#PGR13_RS05275
RRNarL
226 938-227 687 nt · Reverse (-)
PGR13_RS05280GCF_027664925#PGR13_RS05280
HKClassicCurrent focus
227 763-230 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664925#PGR13_RS05280The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0461667
Simplified PFAM architecture for HKOC_0461667
PFAM domain coverage: 425 / 868 aa (49.0%)
1 aa868 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-148] | HisKA_3[241-303] | HATPase_c[352-439] | DUF7134[553-687]
- Domain count: 4
- Matched identifier: HKOC_0461667
- Positioned domains: DUF7134 10-148 ; HisKA_3 241-303 ; HATPase_c 352-439 ; DUF7134 553-687
Cluster members and taxonomy
Representative gene: GCF_027664925#PGR13_RS05280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_027664925
AssemblyASM2766492v1 · Scaffoldhaploid
Genome composition2 242 707 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key