1 Response_reg#1
3-116 aa · 114 aa · 42.5% of protein
Raw token
Response_reg:3:1.93e-19:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PHA12_RS04175
Response regulator LytTR family
Bifidobacterium pseudocatenulatum · GCF_027664745
ClassRRTypeLytTRLength268 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027664745#PHA12_RS04175Stable P2CS identifier used across views.
GenomeGCF_027664745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 268 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 LytTR#2
173-246 aa · 74 aa · 27.6% of protein
Raw token
LytTR:173:0.000000441:246:79:98- Raw architecture: Response_reg:3:1.93e-19:116:116:111#LytTR:173:0.000000441:246:79:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027664745::NZ_JAQDFH010000002.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span153022-153828Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664745::NZ_JAQDFH010000002.1::G00009Context members
PHA12_RS04175
Partner locus tags
PHA12_RS04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270838734.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPHA12_RS04175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFH010000002.1Sequence record reported by the local genomic context database.
Genomic interval153 022-153 828 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 022-153 828 ntGCF_027664745::NZ_JAQDFH010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664745::NZ_JAQDFH010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFH010000002.1All displayed genes belong to this local TCS context.
Neighborhood span153 022-153 828 nt807 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 022 nt153 828 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PHA12_RS04175GCF_027664745#PHA12_RS04175
RRLytTRCurrent focus
153 022-153 828 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664745#PHA12_RS04175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0621450
Simplified PFAM architecture for RROC_0621450
PFAM domain coverage: 196 / 268 aa (73.1%)
1 aa268 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-121] | LytTR[173-249]
- Domain count: 2
- Matched identifier: RROC_0621450
- Positioned domains: Response_reg 3-121 ; LytTR 173-249
Cluster members and taxonomy
Representative gene: GCF_027664745#PHA12_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_027664745
AssemblyASM2766474v1 · Scaffoldhaploid
Genome composition2 152 886 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key