1 HisKA#1
45-110 aa · 66 aa · 24.9% of protein
Raw token
HisKA:45:0.00000023:110:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR30_RS03550
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_027664505
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027664505#PGR30_RS03550Stable P2CS identifier used across views.
GenomeGCF_027664505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 PGR30_RS03550MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 265 aa (63.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
163-263 aa · 101 aa · 38.1% of protein
Raw token
HATPase_c:163:4.09e-29:263:101:109- Raw architecture: HisKA:45:0.00000023:110:66:64#HATPase_c:163:4.09e-29:263:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027664505::NZ_JAQDFT010000004.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7138-8813Genomic interval covered by the local TCS group.
Context group ID
GCF_027664505::NZ_JAQDFT010000004.1::G00008Context members
PGR30_RS03545PGR30_RS03550
Partner locus tags
PGR30_RS03545PGR30_RS03550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR30_RS03550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFT010000004.1Sequence record reported by the local genomic context database.
Genomic interval7 782-8 813 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 138-8 813 ntGCF_027664505::NZ_JAQDFT010000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664505::NZ_JAQDFT010000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span7 138-8 813 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 138 nt8 813 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR30_RS03545GCF_027664505#PGR30_RS03545
RROmpR
7 138-7 785 nt · Forward (+)
PGR30_RS03550GCF_027664505#PGR30_RS03550
HKClassicCurrent focus
7 782-8 813 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741685#BPSE_RS00035Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2902396
Simplified PFAM architecture for HKOC_2902396
PFAM domain coverage: 172 / 279 aa (61.6%)
1 aa279 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[60-123] | HATPase_c[171-278]
- Domain count: 2
- Matched identifier: HKOC_2902396
- Positioned domains: HisKA 60-123 ; HATPase_c 171-278
Cluster members and taxonomy
Representative gene: GCF_000741685#BPSE_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_027664505
AssemblyASM2766450v1 · Scaffoldhaploid
Genome composition2 335 040 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 29 · HK 12 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key