1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000109:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGQ22_RS09720
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_027661225
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027661225#PGQ22_RS09720Stable P2CS identifier used across views.
GenomeGCF_027661225Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:3e-27:341:101:109- Raw architecture: HisKA:123:0.000000109:189:67:64#HATPase_c:241:3e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027661225::NZ_JAQDMY010000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12746-14466Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027661225::NZ_JAQDMY010000010.1::G00003Context members
PGQ22_RS09715PGQ22_RS09720
Partner locus tags
PGQ22_RS09715PGQ22_RS09720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005936000.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RDE2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RDE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGQ22_RS09720Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDMY010000010.1Sequence record reported by the local genomic context database.
Genomic interval13 435-14 466 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 746-14 466 ntGCF_027661225::NZ_JAQDMY010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027661225::NZ_JAQDMY010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDMY010000010.1All displayed genes belong to this local TCS context.
Neighborhood span12 746-14 466 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 746 nt14 466 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGQ22_RS09715GCF_027661225#PGQ22_RS09715
RROmpR
12 746-13 438 nt · Forward (+)
PGQ22_RS09720GCF_027661225#PGQ22_RS09720
HKClassicCurrent focus
13 435-14 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS13845Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827791
Simplified PFAM architecture for HKOC_2827791
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2827791
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS13845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027661225
AssemblyASM2766122v1 · Scaffoldhaploid
Genome composition3 404 767 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 81 · HK 42 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key