1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:2.55e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGQ22_RS02435
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_027661225
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027661225#PGQ22_RS02435Stable P2CS identifier used across views.
GenomeGCF_027661225Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:8.49e-26:218:77:77- Raw architecture: Response_reg:4:2.55e-34:112:111:111#Trans_reg_C:144:8.49e-26:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027661225::NZ_JAQDMY010000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109968-111994Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027661225::NZ_JAQDMY010000002.1::G00023Context members
PGQ22_RS02430PGQ22_RS02435
Partner locus tags
PGQ22_RS02430PGQ22_RS02435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_238033704.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F762Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F762_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGQ22_RS02435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDMY010000002.1Sequence record reported by the local genomic context database.
Genomic interval111 332-111 994 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 968-111 994 ntGCF_027661225::NZ_JAQDMY010000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027661225::NZ_JAQDMY010000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDMY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span109 968-111 994 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 968 nt111 994 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGQ22_RS02430GCF_027661225#PGQ22_RS02430
HKClassic
109 968-111 344 nt · Reverse (-)
PGQ22_RS02435GCF_027661225#PGQ22_RS02435
RROmpRCurrent focus
111 332-111 994 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022136235#L0P42_RS07015Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1743437
Simplified PFAM architecture for RROC_1743437
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1743437
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_022136235#L0P42_RS07015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027661225
AssemblyASM2766122v1 · Scaffoldhaploid
Genome composition3 404 767 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 81 · HK 42 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key