1 dCache_1#1
141-285 aa · 145 aa · 23.7% of protein
Raw token
dCache_1:141:0.0000000000948:285:149:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGQ22_RS02335
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_027661225
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027661225#PGQ22_RS02335Stable P2CS identifier used across views.
GenomeGCF_027661225Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage333 / 611 aa (54.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation3 items
2 His_kinase#2
385-464 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:385:1.07e-33:464:80:803 HATPase_c#3
480-587 aa · 108 aa · 17.7% of protein
Raw token
HATPase_c:480:1.3e-16:587:111:109- Raw architecture: dCache_1:141:0.0000000000948:285:149:195#His_kinase:385:1.07e-33:464:80:80#HATPase_c:480:1.3e-16:587:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027661225::NZ_JAQDMY010000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90746-94266Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027661225::NZ_JAQDMY010000002.1::G00022Context members
PGQ22_RS02335PGQ22_RS02340
Partner locus tags
PGQ22_RS02335PGQ22_RS02340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462802.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IKZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IKZ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGQ22_RS02335Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDMY010000002.1Sequence record reported by the local genomic context database.
Genomic interval90 746-92 581 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 746-94 266 ntGCF_027661225::NZ_JAQDMY010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027661225::NZ_JAQDMY010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDMY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span90 746-94 266 nt3 521 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 746 nt94 266 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGQ22_RS02335GCF_027661225#PGQ22_RS02335
HKClassicCurrent focus
90 746-92 581 nt · Reverse (-)
PGQ22_RS02340GCF_027661225#PGQ22_RS02340
RRunclassified
92 668-94 266 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS15080Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1001125
Simplified PFAM architecture for HKOC_1001125
PFAM domain coverage: 417 / 611 aa (68.2%)
1 aa611 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[56-284] | His_kinase[385-464] | HATPase_c[481-588]
- Domain count: 3
- Matched identifier: HKOC_1001125
- Positioned domains: dCache_1 56-284 ; His_kinase 385-464 ; HATPase_c 481-588
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS15080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_027661225
AssemblyASM2766122v1 · Scaffoldhaploid
Genome composition3 404 767 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 81 · HK 42 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key