1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:1.15e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS14835
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_027495705
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027495705#O8D18_RS14835Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:3.67e-27:223:78:77- Raw architecture: Response_reg:4:1.15e-34:114:111:111#Trans_reg_C:148:3.67e-27:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027495705::NZ_JAPZED010000031.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3632-5349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_14835RefSeq proteinWP_217285468.1
Context group ID
GCF_027495705::NZ_JAPZED010000031.1::G00048Context members
O8D18_RS14830O8D18_RS14835
Partner locus tags
O8D18_RS14830O8D18_RS14835
Partner old locus tags
O8D18_14830O8D18_14835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217285468.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS14835Primary locus identifier stored in the genes table.
Old locus tagO8D18_14835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000031.1Sequence record reported by the local genomic context database.
Genomic interval4 660-5 349 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 632-5 349 ntGCF_027495705::NZ_JAPZED010000031.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000031.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000031.1All displayed genes belong to this local TCS context.
Neighborhood span3 632-5 349 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 632 nt5 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O8D18_RS14830GCF_027495705#O8D18_RS14830
HKClassic
3 632-4 663 nt · Reverse (-)
O8D18_RS14835GCF_027495705#O8D18_RS14835
RROmpRCurrent focus
4 660-5 349 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019061315#KTT80_RS10410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1273768
Simplified PFAM architecture for RROC_1273768
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1273768
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_019061315#KTT80_RS10410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key