1 Response_reg#1
5-113 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:5:8.9e-27:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS13610
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_027495705
ClassRRTypeunclassifiedLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027495705#O8D18_RS13610Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 533 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa533 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
430-470 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:430:0.0000000000297:470:41:423 HTH_AraC#3
485-521 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:485:0.00000664:521:37:42- Raw architecture: Response_reg:5:8.9e-27:113:109:111#HTH_AraC:430:0.0000000000297:470:41:42#HTH_AraC:485:0.00000664:521:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027495705::NZ_JAPZED010000019.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23152-26577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_13610RefSeq proteinWP_269763040.1
Context group ID
GCF_027495705::NZ_JAPZED010000019.1::G00045Context members
O8D18_RS13605O8D18_RS13610
Partner locus tags
O8D18_RS13605O8D18_RS13610
Partner old locus tags
O8D18_13605O8D18_13610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_269763040.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3KCR4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3KCR4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS13610Primary locus identifier stored in the genes table.
Old locus tagO8D18_13610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000019.1Sequence record reported by the local genomic context database.
Genomic interval24 976-26 577 nt1 602 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 152-26 577 ntGCF_027495705::NZ_JAPZED010000019.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000019.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000019.1All displayed genes belong to this local TCS context.
Neighborhood span23 152-26 577 nt3 426 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 152 nt26 577 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O8D18_RS13605GCF_027495705#O8D18_RS13605
HKClassic
23 152-24 957 nt · Forward (+)
O8D18_RS13610GCF_027495705#O8D18_RS13610
RRunclassifiedCurrent focus
24 976-26 577 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027495645#O8D19_RS13150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107099
Simplified PFAM architecture for RROC_0107099
PFAM domain coverage: 303 / 533 aa (56.8%)
1 aa533 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-117] | GGDEF_2[173-283] | HTH_18[444-522]
- Domain count: 3
- Matched identifier: RROC_0107099
- Positioned domains: Response_reg 5-117 ; GGDEF_2 173-283 ; HTH_18 444-522
Cluster members and taxonomy
Representative gene: GCF_027495645#O8D19_RS13150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key