1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:1.94e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS12545
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_027495705
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027495705#O8D18_RS12545Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:152:2.51e-27:227:76:77- Raw architecture: Response_reg:4:1.94e-34:112:111:111#Trans_reg_C:152:2.51e-27:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027495705::NZ_JAPZED010000015.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39667-41799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_12545RefSeq proteinWP_269762953.1
Context group ID
GCF_027495705::NZ_JAPZED010000015.1::G00041Context members
O8D18_RS12540O8D18_RS12545
Partner locus tags
O8D18_RS12540O8D18_RS12545
Partner old locus tags
O8D18_12540O8D18_12545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_269762953.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3KAI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3KAI6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS12545Primary locus identifier stored in the genes table.
Old locus tagO8D18_12545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000015.1Sequence record reported by the local genomic context database.
Genomic interval41 107-41 799 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 667-41 799 ntGCF_027495705::NZ_JAPZED010000015.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000015.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000015.1All displayed genes belong to this local TCS context.
Neighborhood span39 667-41 799 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 667 nt41 799 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O8D18_RS12540GCF_027495705#O8D18_RS12540
HKClassic
39 667-41 094 nt · Reverse (-)
O8D18_RS12545GCF_027495705#O8D18_RS12545
RROmpRCurrent focus
41 107-41 799 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027495645#O8D19_RS11810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1226430
Simplified PFAM architecture for RROC_1226430
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1226430
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_027495645#O8D19_RS11810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key