1 HAMP#1
162-239 aa · 78 aa · 16.4% of protein
Raw token
HAMP:162:0.00000000000968:239:78:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS12540
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_027495705
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027495705#O8D18_RS12540Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 475 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
250-308 aa · 59 aa · 12.4% of protein
Raw token
HisKA:250:0.000000128:308:59:643 HATPase_c#3
365-470 aa · 106 aa · 22.3% of protein
Raw token
HATPase_c:365:3.85e-24:470:106:109- Raw architecture: HAMP:162:0.00000000000968:239:78:69#HisKA:250:0.000000128:308:59:64#HATPase_c:365:3.85e-24:470:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027495705::NZ_JAPZED010000015.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39667-41799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_12540RefSeq proteinWP_269762954.1
Context group ID
GCF_027495705::NZ_JAPZED010000015.1::G00041Context members
O8D18_RS12540O8D18_RS12545
Partner locus tags
O8D18_RS12540O8D18_RS12545
Partner old locus tags
O8D18_12540O8D18_12545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_269762954.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3KCK1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3KCK1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS12540Primary locus identifier stored in the genes table.
Old locus tagO8D18_12540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000015.1Sequence record reported by the local genomic context database.
Genomic interval39 667-41 094 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 667-41 799 ntGCF_027495705::NZ_JAPZED010000015.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000015.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000015.1All displayed genes belong to this local TCS context.
Neighborhood span39 667-41 799 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 667 nt41 799 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O8D18_RS12540GCF_027495705#O8D18_RS12540
HKClassicCurrent focus
39 667-41 094 nt · Reverse (-)
O8D18_RS12545GCF_027495705#O8D18_RS12545
RROmpR
41 107-41 799 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027495645#O8D19_RS11815Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1670005
Simplified PFAM architecture for HKOC_1670005
PFAM domain coverage: 216 / 475 aa (45.5%)
1 aa475 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-238] | HisKA[251-309] | HATPase_c[365-470]
- Domain count: 3
- Matched identifier: HKOC_1670005
- Positioned domains: HAMP 188-238 ; HisKA 251-309 ; HATPase_c 365-470
Cluster members and taxonomy
Representative gene: GCF_027495645#O8D19_RS11815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key