1 Response_reg#1
6-115 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:6:5.8e-19:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS11305
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_027495705
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027495705#O8D18_RS11305Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 225 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-223 aa · 71 aa · 31.6% of protein
Raw token
Trans_reg_C:153:1.19e-22:223:72:77- Raw architecture: Response_reg:6:5.8e-19:115:111:111#Trans_reg_C:153:1.19e-22:223:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027495705::NZ_JAPZED010000012.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45344-46021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_11305RefSeq proteinWP_269762873.1
Context group ID
GCF_027495705::NZ_JAPZED010000012.1::G00035Context members
O8D18_RS11305
Partner locus tags
O8D18_RS11305
Partner old locus tags
O8D18_11305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_269762873.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3HFN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3HFN3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS11305Primary locus identifier stored in the genes table.
Old locus tagO8D18_11305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000012.1Sequence record reported by the local genomic context database.
Genomic interval45 344-46 021 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 344-46 021 ntGCF_027495705::NZ_JAPZED010000012.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000012.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000012.1All displayed genes belong to this local TCS context.
Neighborhood span45 344-46 021 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 344 nt46 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O8D18_RS11305GCF_027495705#O8D18_RS11305
RROmpRCurrent focus
45 344-46 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027495645#O8D19_RS10585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1501627
Simplified PFAM architecture for RROC_1501627
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[152-223]
- Domain count: 2
- Matched identifier: RROC_1501627
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 152-223
Cluster members and taxonomy
Representative gene: GCF_027495645#O8D19_RS10585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key