1 Response_reg#1
5-117 aa · 113 aa · 22.0% of protein
Raw token
Response_reg:5:3.14e-25:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS07640
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_027495705
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027495705#O8D18_RS07640Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 513 aa (29.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
459-497 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:459:0.000000602:497:39:42- Raw architecture: Response_reg:5:3.14e-25:117:113:111#HTH_AraC:459:0.000000602:497:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027495705::NZ_JAPZED010000006.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span91527-93068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_07640RefSeq proteinWP_269762690.1
Context group ID
GCF_027495705::NZ_JAPZED010000006.1::G00024Context members
O8D18_RS07640
Partner locus tags
O8D18_RS07640
Partner old locus tags
O8D18_07640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_269762690.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3HFA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3HFA7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS07640Primary locus identifier stored in the genes table.
Old locus tagO8D18_07640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000006.1Sequence record reported by the local genomic context database.
Genomic interval91 527-93 068 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 527-93 068 ntGCF_027495705::NZ_JAPZED010000006.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000006.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000006.1All displayed genes belong to this local TCS context.
Neighborhood span91 527-93 068 nt1 542 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 527 nt93 068 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O8D18_RS07640GCF_027495705#O8D18_RS07640
RRunclassifiedCurrent focus
91 527-93 068 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027495645#O8D19_RS07440Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0142320
Simplified PFAM architecture for RROC_0142320
PFAM domain coverage: 191 / 513 aa (37.2%)
1 aa513 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[420-497]
- Domain count: 2
- Matched identifier: RROC_0142320
- Positioned domains: Response_reg 5-117 ; HTH_18 420-497
Cluster members and taxonomy
Representative gene: GCF_027495645#O8D19_RS07440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key