1 HisKA#1
61-125 aa · 65 aa · 23.4% of protein
Raw token
HisKA:61:0.0000000000606:125:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O8D18_RS07420
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_027495705
ClassHKTypeClassicLength278 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027495705#O8D18_RS07420Stable P2CS identifier used across views.
GenomeGCF_027495705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length278 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 278 aa (61.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa278 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
172-278 aa · 107 aa · 38.5% of protein
Raw token
HATPase_c:172:2.72e-25:278:108:109- Raw architecture: HisKA:61:0.0000000000606:125:65:64#HATPase_c:172:2.72e-25:278:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027495705::NZ_JAPZED010000006.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38677-40199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO8D18_07420RefSeq proteinWP_101870255.1
Context group ID
GCF_027495705::NZ_JAPZED010000006.1::G00022Context members
O8D18_RS07415O8D18_RS07420
Partner locus tags
O8D18_RS07415O8D18_RS07420
Partner old locus tags
O8D18_07415O8D18_07420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101870255.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PGI1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PGI1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO8D18_RS07420Primary locus identifier stored in the genes table.
Old locus tagO8D18_07420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPZED010000006.1Sequence record reported by the local genomic context database.
Genomic interval39 363-40 199 nt837 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 677-40 199 ntGCF_027495705::NZ_JAPZED010000006.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027495705::NZ_JAPZED010000006.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPZED010000006.1All displayed genes belong to this local TCS context.
Neighborhood span38 677-40 199 nt1 523 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 677 nt40 199 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O8D18_RS07415GCF_027495705#O8D18_RS07415
RROmpR
38 677-39 375 nt · Forward (+)
O8D18_RS07420GCF_027495705#O8D18_RS07420
HKClassicCurrent focus
39 363-40 199 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865325#CDL26_RS04020Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2903012
Simplified PFAM architecture for HKOC_2903012
PFAM domain coverage: 170 / 278 aa (61.2%)
1 aa278 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[62-125] | HATPase_c[172-277]
- Domain count: 2
- Matched identifier: HKOC_2903012
- Positioned domains: HisKA 62-125 ; HATPase_c 172-277
Cluster members and taxonomy
Representative gene: GCF_002865325#CDL26_RS04020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_027495705
AssemblyASM2749570v1 · Contighaploid
Genome composition3 147 935 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key