1 Response_reg#1
4-114 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:4:2.36e-33:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EJ131_RS21050
Response regulator OmpR family
Bacillus mycoides · GCF_027306445
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027306445#EJ131_RS21050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:148:9.97e-25:221:77:77- Raw architecture: Response_reg:4:2.36e-33:114:112:111#Trans_reg_C:148:9.97e-25:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027306445::NZ_RXFX01000036.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33554-36078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEJ131_21340RefSeq proteinWP_002069011.1
Context group ID
GCF_027306445::NZ_RXFX01000036.1::G00050Context members
EJ131_RS21050EJ131_RS21055
Partner locus tags
EJ131_RS21050EJ131_RS21055
Partner old locus tags
EJ131_21340EJ131_21345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002069011.1Primary protein accession used for annex mappings.
UniProt accessionC2Y2X7Primary UniProt accession resolved in the annex database.
UniProt IDC2Y2X7_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEJ131_RS21050Primary locus identifier stored in the genes table.
Old locus tagEJ131_21340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RXFX01000036.1Sequence record reported by the local genomic context database.
Genomic interval33 554-34 234 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 554-36 078 ntGCF_027306445::NZ_RXFX01000036.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027306445::NZ_RXFX01000036.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RXFX01000036.1All displayed genes belong to this local TCS context.
Neighborhood span33 554-36 078 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 554 nt36 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EJ131_RS21050GCF_027306445#EJ131_RS21050
RROmpRCurrent focus
33 554-34 234 nt · Forward (+)
EJ131_RS21055GCF_027306445#EJ131_RS21055
HKClassic
34 231-36 078 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS26395Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408587
Simplified PFAM architecture for RROC_1408587
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1408587
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS26395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_027306445
AssemblyASM2730644v1 · Contighaploid
Genome composition6 068 185 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key