1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:9.52e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EJ131_RS12420
Response regulator OmpR family
Bacillus mycoides · GCF_027306445
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027306445#EJ131_RS12420Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:8.1e-25:225:76:77- Raw architecture: Response_reg:4:9.52e-28:113:111:111#Trans_reg_C:151:8.1e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027306445::NZ_RXFX01000013.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45709-47429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEJ131_12580RefSeq proteinWP_002089212.1
Context group ID
GCF_027306445::NZ_RXFX01000013.1::G00018Context members
EJ131_RS12415EJ131_RS12420
Partner locus tags
EJ131_RS12415EJ131_RS12420
Partner old locus tags
EJ131_12575EJ131_12580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089212.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U3AI57Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U3AI57_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEJ131_RS12420Primary locus identifier stored in the genes table.
Old locus tagEJ131_12580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RXFX01000013.1Sequence record reported by the local genomic context database.
Genomic interval46 734-47 429 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 709-47 429 ntGCF_027306445::NZ_RXFX01000013.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027306445::NZ_RXFX01000013.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RXFX01000013.1All displayed genes belong to this local TCS context.
Neighborhood span45 709-47 429 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 709 nt47 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EJ131_RS12415GCF_027306445#EJ131_RS12415
HKClassic
45 709-46 731 nt · Reverse (-)
EJ131_RS12420GCF_027306445#EJ131_RS12420
RROmpRCurrent focus
46 734-47 429 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS16465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158996
Simplified PFAM architecture for RROC_1158996
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1158996
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS16465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_027306445
AssemblyASM2730644v1 · Contighaploid
Genome composition6 068 185 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 129 · HK 69 · RR 59CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key