1 Response_reg#1
4-85 aa · 82 aa · 62.1% of protein
Raw token
Response_reg:4:0.00000000000000125:85:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C43_RS00905
Response regulator, CheY family
Bifidobacterium breve · GCF_027215475
ClassRRTypeCheYLength132 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027215475#O4C43_RS00905Stable P2CS identifier used across views.
GenomeGCF_027215475Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length132 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 132 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa132 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000000125:85:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027215475::NZ_JAPWEJ010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span241091-241489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C43_00905RefSeq proteinWP_025341963.1
Context group ID
GCF_027215475::NZ_JAPWEJ010000001.1::G00002Context members
O4C43_RS00905
Partner locus tags
O4C43_RS00905
Partner old locus tags
O4C43_00905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025341963.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C43_RS00905Primary locus identifier stored in the genes table.
Old locus tagO4C43_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWEJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval241 091-241 489 nt399 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span241 091-241 489 ntGCF_027215475::NZ_JAPWEJ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027215475::NZ_JAPWEJ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWEJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span241 091-241 489 nt399 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
241 091 nt241 489 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O4C43_RS00905GCF_027215475#O4C43_RS00905
RRCheYCurrent focus
241 091-241 489 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569035#B2258_RS10510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2308383
Simplified PFAM architecture for RROC_2308383
PFAM domain coverage: 84 / 132 aa (63.6%)
1 aa132 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-87]
- Domain count: 1
- Matched identifier: RROC_2308383
- Positioned domains: Response_reg 4-87 ; Response_reg 4-87
Cluster members and taxonomy
Representative gene: GCF_000569035#B2258_RS10510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027215475
AssemblyASM2721547v1 · Contighaploid
Genome composition2 289 070 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key