1 Response_reg#1
4-85 aa · 82 aa · 62.1% of protein
Raw token
Response_reg:4:0.0000000000000014:85:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C46_RS04825
Response regulator, CheY family
Bifidobacterium breve · GCF_027214905
ClassRRTypeCheYLength132 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027214905#O4C46_RS04825Stable P2CS identifier used across views.
GenomeGCF_027214905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length132 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 132 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa132 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000000014:85:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027214905::NZ_JAPWDW010000003.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span306826-307224Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C46_04825RefSeq proteinWP_021648855.1
Context group ID
GCF_027214905::NZ_JAPWDW010000003.1::G00008Context members
O4C46_RS04825
Partner locus tags
O4C46_RS04825
Partner old locus tags
O4C46_04825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021648855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C46_RS04825Primary locus identifier stored in the genes table.
Old locus tagO4C46_04825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWDW010000003.1Sequence record reported by the local genomic context database.
Genomic interval306 826-307 224 nt399 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span306 826-307 224 ntGCF_027214905::NZ_JAPWDW010000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027214905::NZ_JAPWDW010000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWDW010000003.1All displayed genes belong to this local TCS context.
Neighborhood span306 826-307 224 nt399 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
306 826 nt307 224 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O4C46_RS04825GCF_027214905#O4C46_RS04825
RRCheYCurrent focus
306 826-307 224 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466545#HMPREF1587_RS10920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2308335
Simplified PFAM architecture for RROC_2308335
PFAM domain coverage: 84 / 132 aa (63.6%)
1 aa132 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-87]
- Domain count: 1
- Matched identifier: RROC_2308335
- Positioned domains: Response_reg 4-87 ; Response_reg 4-87
Cluster members and taxonomy
Representative gene: GCF_000466545#HMPREF1587_RS10920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027214905
AssemblyASM2721490v1 · Contighaploid
Genome composition2 332 874 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key