1 Response_reg#1
47-153 aa · 107 aa · 40.8% of protein
Raw token
Response_reg:47:3.03e-29:153:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C40_RS01675
Response regulator, AmiR_NasR family
Bifidobacterium breve · GCF_027214765
ClassRRTypeAmiR_NasRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027214765#O4C40_RS01675Stable P2CS identifier used across views.
GenomeGCF_027214765Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 262 aa (59.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 ANTAR#2
200-248 aa · 49 aa · 18.7% of protein
Raw token
ANTAR:200:3.26e-17:248:49:49- Raw architecture: Response_reg:47:3.03e-29:153:108:111#ANTAR:200:3.26e-17:248:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027214765::NZ_JAPWEQ010000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span386229-387017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C40_01665RefSeq proteinWP_003828934.1
Context group ID
GCF_027214765::NZ_JAPWEQ010000001.1::G00003Context members
O4C40_RS01675
Partner locus tags
O4C40_RS01675
Partner old locus tags
O4C40_01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003828934.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B5L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B5L7_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C40_RS01675Primary locus identifier stored in the genes table.
Old locus tagO4C40_01665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWEQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval386 229-387 017 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span386 229-387 017 ntGCF_027214765::NZ_JAPWEQ010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027214765::NZ_JAPWEQ010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWEQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span386 229-387 017 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
386 229 nt387 017 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O4C40_RS01675GCF_027214765#O4C40_RS01675
RRAmiR_NasRCurrent focus
386 229-387 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS05735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644134
Simplified PFAM architecture for RROC_0644134
PFAM domain coverage: 161 / 262 aa (61.5%)
1 aa262 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[47-154] | ANTAR[196-248]
- Domain count: 2
- Matched identifier: RROC_0644134
- Positioned domains: Response_reg 47-154 ; Response_reg 47-154 ; ANTAR 196-248 ; ANTAR 196-248
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027214765
AssemblyASM2721476v1 · Contighaploid
Genome composition2 271 811 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key