1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000164:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4D05_RS00560
Histidine kinase, Classic
Bifidobacterium breve · GCF_027214635
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027214635#O4D05_RS00560Stable P2CS identifier used across views.
GenomeGCF_027214635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:1.59e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000164:244:65:64#HATPase_c:308:1.59e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027214635::NZ_JAPWEO010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133772-135890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4D05_00560RefSeq proteinWP_021648795.1
Context group ID
GCF_027214635::NZ_JAPWEO010000001.1::G00001Context members
O4D05_RS00560O4D05_RS00565
Partner locus tags
O4D05_RS00560O4D05_RS00565
Partner old locus tags
O4D05_00560O4D05_00565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021648795.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3NIN7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3NIN7_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4D05_RS00560Primary locus identifier stored in the genes table.
Old locus tagO4D05_00560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWEO010000001.1Sequence record reported by the local genomic context database.
Genomic interval133 772-135 067 nt1 296 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 772-135 890 ntGCF_027214635::NZ_JAPWEO010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027214635::NZ_JAPWEO010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWEO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 772-135 890 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 772 nt135 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O4D05_RS00560GCF_027214635#O4D05_RS00560
HKClassicCurrent focus
133 772-135 067 nt · Forward (+)
O4D05_RS00565GCF_027214635#O4D05_RS00565
RROmpR
135 186-135 890 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466545#HMPREF1587_RS09005Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2161803
Simplified PFAM architecture for HKOC_2161803
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2161803
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_000466545#HMPREF1587_RS09005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027214635
AssemblyASM2721463v1 · Contighaploid
Genome composition2 384 551 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key