1 Response_reg#1
47-116 aa · 70 aa · 32.0% of protein
Raw token
Response_reg:47:5.36e-21:116:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4D07_RS05300
Response regulator NarL family
Bifidobacterium breve · GCF_027212705
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027212705#O4D07_RS05300Stable P2CS identifier used across views.
GenomeGCF_027212705Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage127 / 219 aa (58.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
154-210 aa · 57 aa · 26.0% of protein
Raw token
HTH_LUXR:154:0.00000000000000101:210:58:58- Raw architecture: Response_reg:47:5.36e-21:116:70:111#HTH_LUXR:154:0.00000000000000101:210:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027212705::NZ_JAPWES010000005.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span122512-123171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4D07_05300RefSeq proteinWP_269334425.1
Context group ID
GCF_027212705::NZ_JAPWES010000005.1::G00011Context members
O4D07_RS05300
Partner locus tags
O4D07_RS05300
Partner old locus tags
O4D07_05300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_269334425.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4D07_RS05300Primary locus identifier stored in the genes table.
Old locus tagO4D07_05300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWES010000005.1Sequence record reported by the local genomic context database.
Genomic interval122 512-123 171 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 512-123 171 ntGCF_027212705::NZ_JAPWES010000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027212705::NZ_JAPWES010000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWES010000005.1All displayed genes belong to this local TCS context.
Neighborhood span122 512-123 171 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 512 nt123 171 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
O4D07_RS05300GCF_027212705#O4D07_RS05300
RRNarLCurrent focus
122 512-123 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027212705#O4D07_RS05300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1790679
Simplified PFAM architecture for RROC_1790679
PFAM domain coverage: 121 / 219 aa (55.3%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[47-116] | GerE[157-207]
- Domain count: 2
- Matched identifier: RROC_1790679
- Positioned domains: Response_reg 47-116 ; GerE 157-207
Cluster members and taxonomy
Representative gene: GCF_027212705#O4D07_RS05300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027212705
AssemblyASM2721270v1 · Contighaploid
Genome composition2 376 742 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 8 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key