1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:7.96e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
O4C48_RS09765
Histidine kinase, Classic
Bifidobacterium breve · GCF_027212565
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027212565#O4C48_RS09765Stable P2CS identifier used across views.
GenomeGCF_027212565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:5.02e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:5.1e-21:612:148:109- Raw architecture: HAMP:252:7.96e-16:320:69:69#HisKA:332:5.02e-18:401:70:64#HATPase_c:465:5.1e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027212565::NZ_JAPWFA010000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span565646-568379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagO4C48_09765RefSeq proteinWP_414626648.1
Context group ID
GCF_027212565::NZ_JAPWFA010000002.1::G00012Context members
O4C48_RS09760O4C48_RS09765
Partner locus tags
O4C48_RS09760O4C48_RS09765
Partner old locus tags
O4C48_09760O4C48_09765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_414626648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagO4C48_RS09765Primary locus identifier stored in the genes table.
Old locus tagO4C48_09765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPWFA010000002.1Sequence record reported by the local genomic context database.
Genomic interval566 421-568 379 nt1 959 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span565 646-568 379 ntGCF_027212565::NZ_JAPWFA010000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027212565::NZ_JAPWFA010000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPWFA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span565 646-568 379 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
565 646 nt568 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
O4C48_RS09760GCF_027212565#O4C48_RS09760
RROmpR
565 646-566 377 nt · Forward (+)
O4C48_RS09765GCF_027212565#O4C48_RS09765
HKClassicCurrent focus
566 421-568 379 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027212565#O4C48_RS09765The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0920075
Simplified PFAM architecture for HKOC_0920075
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0920075
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_027212565#O4C48_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_027212565
AssemblyASM2721256v1 · Contighaploid
Genome composition2 356 189 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key