1 Response_reg#1
6-112 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:6:1.57e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OZZ15_RS05775
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_026805025
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026805025#OZZ15_RS05775Stable P2CS identifier used across views.
GenomeGCF_026805025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:7.52e-26:221:77:77- Raw architecture: Response_reg:6:1.57e-35:112:110:111#Trans_reg_C:146:7.52e-26:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026805025::NZ_JAPRAZ010000006.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159373-161141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOZZ15_05770RefSeq proteinWP_004850543.1
Context group ID
GCF_026805025::NZ_JAPRAZ010000006.1::G00052Context members
OZZ15_RS05770OZZ15_RS05775
Partner locus tags
OZZ15_RS05770OZZ15_RS05775
Partner old locus tags
OZZ15_05765OZZ15_05770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004850543.1Primary protein accession used for annex mappings.
UniProt accessionA0A0V8QDL9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0V8QDL9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOZZ15_RS05775Primary locus identifier stored in the genes table.
Old locus tagOZZ15_05770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPRAZ010000006.1Sequence record reported by the local genomic context database.
Genomic interval160 470-161 141 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span159 373-161 141 ntGCF_026805025::NZ_JAPRAZ010000006.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026805025::NZ_JAPRAZ010000006.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPRAZ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span159 373-161 141 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 373 nt161 141 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OZZ15_RS05770GCF_026805025#OZZ15_RS05770
HKClassic
159 373-160 464 nt · Reverse (-)
OZZ15_RS05775GCF_026805025#OZZ15_RS05775
RROmpRCurrent focus
160 470-161 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS04855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587348
Simplified PFAM architecture for RROC_1587348
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1587348
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS04855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026805025
AssemblyASM2680502v1 · Contighaploid
Genome composition3 409 348 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 95 · HK 46 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key