1 Response_reg#1
11-121 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:11:5.52e-27:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OSC41_RS11700
Response regulator OmpR family
Clostridioides difficile · GCF_026337705
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026337705#OSC41_RS11700Stable P2CS identifier used across views.
GenomeGCF_026337705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.15e-28:229:77:77- Raw architecture: Response_reg:11:5.52e-27:121:112:111#Trans_reg_C:153:1.15e-28:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026337705::NZ_JAPKMB010000035.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109637-111731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOSC41_11680RefSeq proteinWP_266186951.1
Context group ID
GCF_026337705::NZ_JAPKMB010000035.1::G00021Context members
OSC41_RS11700OSC41_RS11705
Partner locus tags
OSC41_RS11700OSC41_RS11705
Partner old locus tags
OSC41_11680OSC41_11685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_266186951.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOSC41_RS11700Primary locus identifier stored in the genes table.
Old locus tagOSC41_11680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPKMB010000035.1Sequence record reported by the local genomic context database.
Genomic interval109 637-110 341 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span109 637-111 731 ntGCF_026337705::NZ_JAPKMB010000035.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026337705::NZ_JAPKMB010000035.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPKMB010000035.1All displayed genes belong to this local TCS context.
Neighborhood span109 637-111 731 nt2 095 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 637 nt111 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OSC41_RS11700GCF_026337705#OSC41_RS11700
RROmpRCurrent focus
109 637-110 341 nt · Forward (+)
OSC41_RS11705GCF_026337705#OSC41_RS11705
HKClassic
110 343-111 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026337705#OSC41_RS11700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1066169
Simplified PFAM architecture for RROC_1066169
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1066169
- Positioned domains: Response_reg 11-120 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_026337705#OSC41_RS11700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_026337705
AssemblyASM2633770v1 · Contighaploid
Genome composition4 134 227 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 110 · HK 52 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key