1 HisKA#1
89-144 aa · 56 aa · 19.0% of protein
Raw token
HisKA:89:0.0000000000227:144:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OSC42_RS08840
Histidine kinase, Classic
Clostridioides difficile · GCF_026337685
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026337685#OSC42_RS08840Stable P2CS identifier used across views.
GenomeGCF_026337685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 295 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-281 aa · 86 aa · 29.2% of protein
Raw token
HATPase_c:196:2.49e-16:281:91:109- Raw architecture: HisKA:89:0.0000000000227:144:56:64#HATPase_c:196:2.49e-16:281:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026337685::NZ_JAPKLZ010000031.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7071-7958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOSC42_08860RefSeq proteinWP_180339902.1
Context group ID
GCF_026337685::NZ_JAPKLZ010000031.1::G00013Context members
OSC42_RS08840
Partner locus tags
OSC42_RS08840
Partner old locus tags
OSC42_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180339902.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOSC42_RS08840Primary locus identifier stored in the genes table.
Old locus tagOSC42_08860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPKLZ010000031.1Sequence record reported by the local genomic context database.
Genomic interval7 071-7 958 nt888 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 071-7 958 ntGCF_026337685::NZ_JAPKLZ010000031.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026337685::NZ_JAPKLZ010000031.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPKLZ010000031.1All displayed genes belong to this local TCS context.
Neighborhood span7 071-7 958 nt888 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 071 nt7 958 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OSC42_RS08840GCF_026337685#OSC42_RS08840
HKClassicCurrent focus
7 071-7 958 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434225#DW761_RS20610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892319
Simplified PFAM architecture for HKOC_2892319
PFAM domain coverage: 144 / 295 aa (48.8%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[196-281]
- Domain count: 2
- Matched identifier: HKOC_2892319
- Positioned domains: HisKA 87-144 ; HATPase_c 196-281
Cluster members and taxonomy
Representative gene: GCF_003434225#DW761_RS20610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_026337685
AssemblyASM2633768v1 · Contighaploid
Genome composition4 152 533 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key