1 HAMP#1
156-227 aa · 72 aa · 15.6% of protein
Raw token
HAMP:156:0.000000797:227:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ORL52_RS01590
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_026278305
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026278305#ORL52_RS01590Stable P2CS identifier used across views.
GenomeGCF_026278305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 462 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-295 aa · 58 aa · 12.6% of protein
Raw token
HisKA:238:0.00000015:295:59:643 HATPase_c#3
349-456 aa · 108 aa · 23.4% of protein
Raw token
HATPase_c:349:5.22e-17:456:108:109- Raw architecture: HAMP:156:0.000000797:227:72:69#HisKA:238:0.00000015:295:59:64#HATPase_c:349:5.22e-17:456:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026278305::NZ_CP111084.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338163-340183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagORL52_01590RefSeq proteinWP_266503136.1
Context group ID
GCF_026278305::NZ_CP111084.1::G00004Context members
ORL52_RS01590ORL52_RS01595
Partner locus tags
ORL52_RS01590ORL52_RS01595
Partner old locus tags
ORL52_01590ORL52_01595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_266503136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagORL52_RS01590Primary locus identifier stored in the genes table.
Old locus tagORL52_01590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP111084.1Sequence record reported by the local genomic context database.
Genomic interval338 163-339 551 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span338 163-340 183 ntGCF_026278305::NZ_CP111084.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026278305::NZ_CP111084.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP111084.1All displayed genes belong to this local TCS context.
Neighborhood span338 163-340 183 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 163 nt340 183 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ORL52_RS01590GCF_026278305#ORL52_RS01590
HKClassicCurrent focus
338 163-339 551 nt · Reverse (-)
ORL52_RS01595GCF_026278305#ORL52_RS01595
RROmpR
339 524-340 183 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026278305#ORL52_RS01590The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1814986
Simplified PFAM architecture for HKOC_1814986
PFAM domain coverage: 161 / 462 aa (34.8%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[239-291] | HATPase_c[350-457]
- Domain count: 2
- Matched identifier: HKOC_1814986
- Positioned domains: HisKA 239-291 ; HATPase_c 350-457
Cluster members and taxonomy
Representative gene: GCF_026278305#ORL52_RS01590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_026278305
AssemblyASM2627830v1 · Complete Genomehaploid
Genome composition3 590 270 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key