1 Hpt#1
4-96 aa · 93 aa · 13.9% of protein
Raw token
Hpt:4:5.78e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ORV03_RS04340
Histidine kinase, CheA
Bacillus wiedmannii · GCF_026275445
ClassHKTypeCheALength667 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026275445#ORV03_RS04340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length667 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 667 aa (63.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa667 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
284-343 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:284:0.00000000337:343:67:673 HATPase_c#3
391-530 aa · 140 aa · 21.0% of protein
Raw token
HATPase_c:391:1.23e-17:530:140:1094 CheW#4
535-667 aa · 133 aa · 19.9% of protein
Raw token
CheW:535:1.95e-21:667:139:138- Raw architecture: Hpt:4:5.78e-17:96:93:84#H-kinase_dim:284:0.00000000337:343:67:67#HATPase_c:391:1.23e-17:530:140:109#CheW:535:1.95e-21:667:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026275445::NZ_JAPJTU010000003.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54976-57477Genomic interval covered by the local TCS group.
Identifiers
Old locus tagORV03_04340RefSeq proteinWP_098102201.1
Context group ID
GCF_026275445::NZ_JAPJTU010000003.1::G00049Context members
ORV03_RS04335ORV03_RS04340
Partner locus tags
ORV03_RS04335ORV03_RS04340
Partner old locus tags
ORV03_04335ORV03_04340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098102201.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5XI62Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5XI62_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagORV03_RS04340Primary locus identifier stored in the genes table.
Old locus tagORV03_04340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAPJTU010000003.1Sequence record reported by the local genomic context database.
Genomic interval55 474-57 477 nt2 004 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 976-57 477 ntGCF_026275445::NZ_JAPJTU010000003.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026275445::NZ_JAPJTU010000003.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPJTU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span54 976-57 477 nt2 502 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 976 nt57 477 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ORV03_RS04335GCF_026275445#ORV03_RS04335
RRCheY
54 976-55 344 nt · Forward (+)
ORV03_RS04340GCF_026275445#ORV03_RS04340
HKCheACurrent focus
55 474-57 477 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555385#CN611_RS08685Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0853931
Simplified PFAM architecture for HKOC_0853931
PFAM domain coverage: 509 / 667 aa (76.3%)
1 aa667 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[284-342] | HATPase_c[391-530] | CheW[536-667]
- Domain count: 5
- Matched identifier: HKOC_0853931
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 284-342 ; HATPase_c 391-530 ; CheW 536-667
Cluster members and taxonomy
Representative gene: GCF_002555385#CN611_RS08685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_026275445
AssemblyASM2627544v1 · Contighaploid
Genome composition5 883 914 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key