1 HAMP#1
54-122 aa · 69 aa · 18.4% of protein
Raw token
HAMP:54:0.00000139:122:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS10140
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026168895#QVE61_RS10140Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 374 aa (65.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation3 items
2 HisKA#2
147-213 aa · 67 aa · 17.9% of protein
Raw token
HisKA:147:0.00000000000000595:213:67:643 HATPase_c#3
260-367 aa · 108 aa · 28.9% of protein
Raw token
HATPase_c:260:1.18e-25:367:109:109- Raw architecture: HAMP:54:0.00000139:122:69:69#HisKA:147:0.00000000000000595:213:67:64#HATPase_c:260:1.18e-25:367:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026168895::NZ_JAPFDE010000144.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1082-2898Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000144.1::G00003Context members
QVE61_RS10140QVE61_RS10145
Partner locus tags
QVE61_RS10140QVE61_RS10145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022424737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS10140Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000144.1Sequence record reported by the local genomic context database.
Genomic interval1 082-2 206 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 082-2 898 ntGCF_026168895::NZ_JAPFDE010000144.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000144.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000144.1All displayed genes belong to this local TCS context.
Neighborhood span1 082-2 898 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 082 nt2 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE61_RS10140GCF_026168895#QVE61_RS10140
HKClassicCurrent focus
1 082-2 206 nt · Reverse (-)
QVE61_RS10145GCF_026168895#QVE61_RS10145
RROmpR
2 203-2 898 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS00890Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658940
Simplified PFAM architecture for HKOC_2658940
PFAM domain coverage: 218 / 374 aa (58.3%)
1 aa374 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[78-120] | HisKA[147-213] | HATPase_c[260-367]
- Domain count: 3
- Matched identifier: HKOC_2658940
- Positioned domains: HAMP 78-120 ; HisKA 147-213 ; HATPase_c 260-367
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS00890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key