1 HisKA#1
18-85 aa · 68 aa · 27.1% of protein
Raw token
HisKA:18:0.000000000000242:85:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS07790
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026168895#QVE61_RS07790Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 251 aa (72.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
129-241 aa · 113 aa · 45.0% of protein
Raw token
HATPase_c:129:2.51e-29:241:113:109- Raw architecture: HisKA:18:0.000000000000242:85:68:64#HATPase_c:129:2.51e-29:241:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026168895::NZ_JAPFDE010000110.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-756Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000110.1::G00013Context members
QVE61_RS07790
Partner locus tags
QVE61_RS07790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287968751.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS07790Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000110.1Sequence record reported by the local genomic context database.
Genomic interval1-756 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-756 ntGCF_026168895::NZ_JAPFDE010000110.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000110.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000110.1All displayed genes belong to this local TCS context.
Neighborhood span1-756 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt756 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVE61_RS07790GCF_026168895#QVE61_RS07790
HKClassicCurrent focus
1-756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS05160Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0890242
Simplified PFAM architecture for HKOC_0890242
PFAM domain coverage: 281 / 653 aa (43.0%)
1 aa653 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[151-252] | HisKA[420-487] | HATPase_c[532-642]
- Domain count: 3
- Matched identifier: HKOC_0890242
- Positioned domains: DUF4118 151-252 ; HisKA 420-487 ; HATPase_c 532-642
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS05160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key