1 Response_reg#1
4-101 aa · 98 aa · 43.9% of protein
Raw token
Response_reg:4:0.000000127:101:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS07600
Response regulator LytTR family
Catenibacterium sp. · GCF_026168895
ClassRRTypeLytTRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026168895#QVE61_RS07600Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 LytTR#2
129-213 aa · 85 aa · 38.1% of protein
Raw token
LytTR:129:3.13e-20:213:91:98- Raw architecture: Response_reg:4:0.000000127:101:105:111#LytTR:129:3.13e-20:213:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026168895::NZ_JAPFDE010000108.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25980-26651Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000108.1::G00004Context members
QVE61_RS07600
Partner locus tags
QVE61_RS07600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287968727.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS07600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000108.1Sequence record reported by the local genomic context database.
Genomic interval25 980-26 651 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 980-26 651 ntGCF_026168895::NZ_JAPFDE010000108.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000108.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000108.1All displayed genes belong to this local TCS context.
Neighborhood span25 980-26 651 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 980 nt26 651 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVE61_RS07600GCF_026168895#QVE61_RS07600
RRLytTRCurrent focus
25 980-26 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026168895#QVE61_RS07600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1615658
Simplified PFAM architecture for RROC_1615658
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-103] | LytTR[129-213]
- Domain count: 2
- Matched identifier: RROC_1615658
- Positioned domains: Response_reg 4-103 ; LytTR 129-213
Cluster members and taxonomy
Representative gene: GCF_026168895#QVE61_RS07600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key