1 HAMP#1
309-378 aa · 70 aa · 11.6% of protein
Raw token
HAMP:309:0.00000000000017:378:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS07290
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026168895#QVE61_RS07290Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 602 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.8% of protein
Raw token
HisKA:397:6.48e-17:461:65:643 HATPase_c#3
506-601 aa · 96 aa · 15.9% of protein
Raw token
HATPase_c:506:6.04e-17:601:103:109- Raw architecture: HAMP:309:0.00000000000017:378:70:69#HisKA:397:6.48e-17:461:65:64#HATPase_c:506:6.04e-17:601:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026168895::NZ_JAPFDE010000107.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17473-19930Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000107.1::G00012Context members
QVE61_RS07290QVE61_RS07295
Partner locus tags
QVE61_RS07290QVE61_RS07295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129980878.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS07290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000107.1Sequence record reported by the local genomic context database.
Genomic interval17 473-19 281 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 473-19 930 ntGCF_026168895::NZ_JAPFDE010000107.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000107.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000107.1All displayed genes belong to this local TCS context.
Neighborhood span17 473-19 930 nt2 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 473 nt19 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE61_RS07290GCF_026168895#QVE61_RS07290
HKClassicCurrent focus
17 473-19 281 nt · Reverse (-)
QVE61_RS07295GCF_026168895#QVE61_RS07295
RROmpR
19 268-19 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS03060Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1043551
Simplified PFAM architecture for HKOC_1043551
PFAM domain coverage: 211 / 602 aa (35.0%)
1 aa602 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[327-377] | HisKA[397-461] | HATPase_c[506-600]
- Domain count: 3
- Matched identifier: HKOC_1043551
- Positioned domains: HAMP 327-377 ; HisKA 397-461 ; HATPase_c 506-600
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS03060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key