1 sCache_like#1
72-131 aa · 60 aa · 10.7% of protein
Raw token
sCache_like:72:0.00000183:131:60:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS06705
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026168895#QVE61_RS06705Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPAS_8HisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage340 / 560 aa (60.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation5 items
2 HAMP#2
159-227 aa · 69 aa · 12.3% of protein
Raw token
HAMP:159:0.00000051:227:70:693 PAS_8#3
238-271 aa · 34 aa · 6.1% of protein
Raw token
PAS_8:238:0.0000163:271:34:654 HisKA#4
337-403 aa · 67 aa · 12.0% of protein
Raw token
HisKA:337:1.41e-17:403:67:645 HATPase_c#5
448-557 aa · 110 aa · 19.6% of protein
Raw token
HATPase_c:448:3.81e-31:557:110:109- Raw architecture: sCache_like:72:0.00000183:131:60:114#HAMP:159:0.00000051:227:70:69#PAS_8:238:0.0000163:271:34:65#HisKA:337:1.41e-17:403:67:64#HATPase_c:448:3.81e-31:557:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026168895::NZ_JAPFDE010000101.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span507-2866Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000101.1::G00005Context members
QVE61_RS06705QVE61_RS06710
Partner locus tags
QVE61_RS06705QVE61_RS06710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129980806.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS06705Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000101.1Sequence record reported by the local genomic context database.
Genomic interval507-2 189 nt1 683 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span507-2 866 ntGCF_026168895::NZ_JAPFDE010000101.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000101.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000101.1All displayed genes belong to this local TCS context.
Neighborhood span507-2 866 nt2 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
507 nt2 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE61_RS06705GCF_026168895#QVE61_RS06705
HKClassicCurrent focus
507-2 189 nt · Reverse (-)
QVE61_RS06710GCF_026168895#QVE61_RS06710
RROmpR
2 189-2 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS02335Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1258817
Simplified PFAM architecture for HKOC_1258817
PFAM domain coverage: 176 / 560 aa (31.4%)
1 aa560 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[337-403] | HATPase_c[450-558]
- Domain count: 2
- Matched identifier: HKOC_1258817
- Positioned domains: HisKA 337-403 ; HATPase_c 450-558
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS02335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key