1 HAMP#1
159-228 aa · 70 aa · 15.9% of protein
Raw token
HAMP:159:0.0000000148:228:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS04760
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026168895#QVE61_RS04760Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage215 / 441 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-301 aa · 60 aa · 13.6% of protein
Raw token
HisKA:242:0.000000000486:301:60:643 HATPase_c#3
356-440 aa · 85 aa · 19.3% of protein
Raw token
HATPase_c:356:0.00000119:440:108:109- Raw architecture: HAMP:159:0.0000000148:228:70:69#HisKA:242:0.000000000486:301:60:64#HATPase_c:356:0.00000119:440:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026168895::NZ_JAPFDE010000077.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20468-22481Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000077.1::G00002Context members
QVE61_RS04755QVE61_RS04760
Partner locus tags
QVE61_RS04755QVE61_RS04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287968475.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS04760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000077.1Sequence record reported by the local genomic context database.
Genomic interval21 156-22 481 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 468-22 481 ntGCF_026168895::NZ_JAPFDE010000077.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000077.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000077.1All displayed genes belong to this local TCS context.
Neighborhood span20 468-22 481 nt2 014 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 468 nt22 481 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE61_RS04755GCF_026168895#QVE61_RS04755
RROmpR
20 468-21 163 nt · Forward (+)
QVE61_RS04760GCF_026168895#QVE61_RS04760
HKClassicCurrent focus
21 156-22 481 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026168895#QVE61_RS04760The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2066781
Simplified PFAM architecture for HKOC_2066781
PFAM domain coverage: 97 / 441 aa (22.0%)
1 aa441 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[188-227] | HisKA[242-298]
- Domain count: 2
- Matched identifier: HKOC_2066781
- Positioned domains: HAMP 188-227 ; HisKA 242-298
Cluster members and taxonomy
Representative gene: GCF_026168895#QVE61_RS04760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key