1 HisKA_3#1
236-303 aa · 68 aa · 15.7% of protein
Raw token
HisKA_3:236:3.32e-22:303:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS04725
Histidine kinase, Classic
Catenibacterium sp. · GCF_026168895
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026168895#QVE61_RS04725Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 434 aa (35.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
341-425 aa · 85 aa · 19.6% of protein
Raw token
HATPase_c:341:0.000000000000588:425:103:109- Raw architecture: HisKA_3:236:3.32e-22:303:68:68#HATPase_c:341:0.000000000000588:425:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026168895::NZ_JAPFDE010000077.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13804-15775Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000077.1::G00001Context members
QVE61_RS04720QVE61_RS04725
Partner locus tags
QVE61_RS04720QVE61_RS04725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287968472.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS04725Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000077.1Sequence record reported by the local genomic context database.
Genomic interval14 471-15 775 nt1 305 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 804-15 775 ntGCF_026168895::NZ_JAPFDE010000077.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000077.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000077.1All displayed genes belong to this local TCS context.
Neighborhood span13 804-15 775 nt1 972 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 804 nt15 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE61_RS04720GCF_026168895#QVE61_RS04720
RRNarL
13 804-14 478 nt · Reverse (-)
QVE61_RS04725GCF_026168895#QVE61_RS04725
HKClassicCurrent focus
14 471-15 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026168895#QVE61_RS04725The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2135413
Simplified PFAM architecture for HKOC_2135413
PFAM domain coverage: 154 / 434 aa (35.5%)
1 aa434 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[236-303] | HATPase_c[342-427]
- Domain count: 2
- Matched identifier: HKOC_2135413
- Positioned domains: HisKA_3 236-303 ; HATPase_c 342-427
Cluster members and taxonomy
Representative gene: GCF_026168895#QVE61_RS04725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key