1 Response_reg#1
3-83 aa · 81 aa · 36.0% of protein
Raw token
Response_reg:3:0.0000000544:83:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS02230
Response regulator LytTR family
Catenibacterium sp. · GCF_026168895
ClassRRTypeLytTRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026168895#QVE61_RS02230Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 225 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 LytTR#2
129-215 aa · 87 aa · 38.7% of protein
Raw token
LytTR:129:0.000000000000141:215:93:98- Raw architecture: Response_reg:3:0.0000000544:83:86:111#LytTR:129:0.000000000000141:215:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026168895::NZ_JAPFDE010000041.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1440-2117Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000041.1::G00006Context members
QVE61_RS02230
Partner locus tags
QVE61_RS02230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_161220355.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS02230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000041.1Sequence record reported by the local genomic context database.
Genomic interval1 440-2 117 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 440-2 117 ntGCF_026168895::NZ_JAPFDE010000041.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000041.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000041.1All displayed genes belong to this local TCS context.
Neighborhood span1 440-2 117 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 440 nt2 117 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVE61_RS02230GCF_026168895#QVE61_RS02230
RRLytTRCurrent focus
1 440-2 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS12055Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1482091
Simplified PFAM architecture for RROC_1482091
PFAM domain coverage: 87 / 225 aa (38.7%)
1 aa225 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[130-216]
- Domain count: 1
- Matched identifier: RROC_1482091
- Positioned domains: LytTR 130-216 ; LytTR 130-216
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS12055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key