1 Response_reg#1
8-116 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:8:0.000000000489:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE61_RS01425
Response regulator OmpR family
Catenibacterium sp. · GCF_026168895
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026168895#QVE61_RS01425Stable P2CS identifier used across views.
GenomeGCF_026168895Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 226 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-215 aa · 68 aa · 30.1% of protein
Raw token
Trans_reg_C:148:6.59e-16:215:68:77- Raw architecture: Response_reg:8:0.000000000489:116:110:111#Trans_reg_C:148:6.59e-16:215:68:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026168895::NZ_JAPFDE010000025.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span35137-35817Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026168895::NZ_JAPFDE010000025.1::G00018Context members
QVE61_RS01425
Partner locus tags
QVE61_RS01425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287968162.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE61_RS01425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDE010000025.1Sequence record reported by the local genomic context database.
Genomic interval35 137-35 817 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 137-35 817 ntGCF_026168895::NZ_JAPFDE010000025.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026168895::NZ_JAPFDE010000025.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDE010000025.1All displayed genes belong to this local TCS context.
Neighborhood span35 137-35 817 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 137 nt35 817 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVE61_RS01425GCF_026168895#QVE61_RS01425
RROmpRCurrent focus
35 137-35 817 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026168895#QVE61_RS01425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1438522
Simplified PFAM architecture for RROC_1438522
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1438522
- Positioned domains: Response_reg 8-115 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_026168895#QVE61_RS01425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 022 · GCF_026168895
AssemblyASM2616889v1 · Contighaploid
Genome composition2 272 832 bp · 34,0% GCCatenibacterium sp.
Signal transduction countsGenes 30 · HK 13 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key