1 HisKA_3#1
242-300 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:242:0.0000000000000106:300:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMB48_RS07385
Histidine kinase, Classic
Bifidobacterium sp. FKU · GCF_026016385
ClassHKTypeClassicLength795 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026016385#MMB48_RS07385Stable P2CS identifier used across views.
GenomeGCF_026016385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length795 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 795 aa (28.2%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa795 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
343-436 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:343:0.000000000000285:436:110:1093 HisKA_3#3
692-762 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:692:0.00000728:762:71:68- Raw architecture: HisKA_3:242:0.0000000000000106:300:59:68#HATPase_c:343:0.000000000000285:436:110:109#HisKA_3:692:0.00000728:762:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026016385::NZ_CP092888.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1610520-1613851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMMB48_07340RefSeq proteinWP_032744319.1
Context group ID
GCF_026016385::NZ_CP092888.1::G00017Context members
MMB48_RS07385MMB48_RS07390
Partner locus tags
MMB48_RS07385MMB48_RS07390
Partner old locus tags
MMB48_07340MMB48_07345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032744319.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D5BTN9Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D5BTN9_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMB48_RS07385Primary locus identifier stored in the genes table.
Old locus tagMMB48_07340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP092888.1Sequence record reported by the local genomic context database.
Genomic interval1 610 520-1 612 907 nt2 388 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 610 520-1 613 851 ntGCF_026016385::NZ_CP092888.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026016385::NZ_CP092888.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP092888.1All displayed genes belong to this local TCS context.
Neighborhood span1 610 520-1 613 851 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 610 520 nt1 613 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MMB48_RS07385GCF_026016385#MMB48_RS07385
HKClassicCurrent focus
1 610 520-1 612 907 nt · Forward (+)
MMB48_RS07390GCF_026016385#MMB48_RS07390
RRNarL
1 612 991-1 613 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS05980Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0559744
Simplified PFAM architecture for HKOC_0559744
PFAM domain coverage: 410 / 798 aa (51.4%)
1 aa798 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-139] | HisKA_3[245-306] | HATPase_c[346-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0559744
- Positioned domains: DUF7134 16-139 ; HisKA_3 245-306 ; HATPase_c 346-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS05980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 922 857 · GCF_026016385
AssemblyASM2601638v1 · Complete Genomehaploid
Genome composition2 615 721 bp · 59,0% GCBifidobacterium sp. FKU
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key