1 Response_reg#1
23-130 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:23:3.91e-30:130:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMB48_RS05355
Response regulator OmpR family
Bifidobacterium sp. FKU · GCF_026016385
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_026016385#MMB48_RS05355Stable P2CS identifier used across views.
GenomeGCF_026016385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 240 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
165-237 aa · 73 aa · 30.4% of protein
Raw token
Trans_reg_C:165:2.38e-23:237:75:77- Raw architecture: Response_reg:23:3.91e-30:130:111:111#Trans_reg_C:165:2.38e-23:237:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_026016385::NZ_CP092888.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1221618-1222283Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMMB48_05340RefSeq proteinWP_032744186.1
Context group ID
GCF_026016385::NZ_CP092888.1::G00013Context members
MMB48_RS05355
Partner locus tags
MMB48_RS05355
Partner old locus tags
MMB48_05340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032744186.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D4XXQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D4XXQ9_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMB48_RS05355Primary locus identifier stored in the genes table.
Old locus tagMMB48_05340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP092888.1Sequence record reported by the local genomic context database.
Genomic interval1 221 618-1 222 283 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 221 618-1 222 283 ntGCF_026016385::NZ_CP092888.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026016385::NZ_CP092888.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP092888.1All displayed genes belong to this local TCS context.
Neighborhood span1 221 618-1 222 283 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 221 618 nt1 222 283 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MMB48_RS05355GCF_026016385#MMB48_RS05355
RROmpRCurrent focus
1 221 618-1 222 283 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS06360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0883976
Simplified PFAM architecture for RROC_0883976
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0883976
- Positioned domains: Response_reg 23-130 ; Response_reg 23-130 ; Trans_reg_C 165-236 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 922 857 · GCF_026016385
AssemblyASM2601638v1 · Complete Genomehaploid
Genome composition2 615 721 bp · 59,0% GCBifidobacterium sp. FKU
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key