1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000197:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OGI63_RS07140
Histidine kinase, Classic
Bifidobacterium sp. KRGSERBCFTRI · GCF_025908335
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025908335#OGI63_RS07140Stable P2CS identifier used across views.
GenomeGCF_025908335Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.52e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:2.78e-20:568:148:109- Raw architecture: HAMP:208:0.00000000000000197:277:70:69#HisKA:288:2.52e-16:357:70:64#HATPase_c:421:2.78e-20:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025908335::NZ_CP109653.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1674147-1676734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOGI63_07140RefSeq proteinWP_011743005.1
Context group ID
GCF_025908335::NZ_CP109653.1::G00013Context members
OGI63_RS07140OGI63_RS07145
Partner locus tags
OGI63_RS07140OGI63_RS07145
Partner old locus tags
OGI63_07140OGI63_07145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743005.1Primary protein accession used for annex mappings.
UniProt accessionA1A0W7Primary UniProt accession resolved in the annex database.
UniProt IDA1A0W7_BIFAADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOGI63_RS07140Primary locus identifier stored in the genes table.
Old locus tagOGI63_07140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP109653.1Sequence record reported by the local genomic context database.
Genomic interval1 674 147-1 675 928 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 674 147-1 676 734 ntGCF_025908335::NZ_CP109653.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025908335::NZ_CP109653.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP109653.1All displayed genes belong to this local TCS context.
Neighborhood span1 674 147-1 676 734 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 674 147 nt1 676 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OGI63_RS07140GCF_025908335#OGI63_RS07140
HKClassicCurrent focus
1 674 147-1 675 928 nt · Reverse (-)
OGI63_RS07145GCF_025908335#OGI63_RS07145
RROmpR
1 676 003-1 676 734 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS03030Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1092781
Simplified PFAM architecture for HKOC_1092781
PFAM domain coverage: 268 / 593 aa (45.2%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-566]
- Domain count: 3
- Matched identifier: HKOC_1092781
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-566
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS03030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 985 571 · GCF_025908335
AssemblyASM2590833v1 · Chromosomehaploid
Genome composition3 381 084 bp · 60,0% GCBifidobacterium sp. KRGSERBCFTRI
Signal transduction countsGenes 38 · HK 16 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key