1 HAMP#1
62-129 aa · 68 aa · 19.0% of protein
Raw token
HAMP:62:0.00000000639:129:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS09665
Histidine kinase, Classic
Bacillus sp. 41-22 · GCF_025809295
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025809295#LCF45_RS09665Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 357 aa (68.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000288:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:2.49e-32:352:110:109- Raw architecture: HAMP:62:0.00000000639:129:68:69#HisKA:133:0.0000000000000288:199:67:64#HATPase_c:243:2.49e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025809295::NZ_CP084035.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1883910-1885657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_09640RefSeq proteinWP_263894767.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00028Context members
LCF45_RS09660LCF45_RS09665
Partner locus tags
LCF45_RS09660LCF45_RS09665
Partner old locus tags
LCF45_09635LCF45_09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_263894767.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS09665Primary locus identifier stored in the genes table.
Old locus tagLCF45_09640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval1 884 584-1 885 657 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 883 910-1 885 657 ntGCF_025809295::NZ_CP084035.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span1 883 910-1 885 657 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 883 910 nt1 885 657 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCF45_RS09660GCF_025809295#LCF45_RS09660
RROmpR
1 883 910-1 884 587 nt · Forward (+)
LCF45_RS09665GCF_025809295#LCF45_RS09665
HKClassicCurrent focus
1 884 584-1 885 657 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025809295#LCF45_RS09665The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2768148
Simplified PFAM architecture for HKOC_2768148
PFAM domain coverage: 176 / 357 aa (49.3%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2768148
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_025809295#LCF45_RS09665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key