1 CHASE3#1
46-172 aa · 127 aa · 14.2% of protein
Raw token
CHASE3:46:3.02e-17:172:135:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCF45_RS05260
Histidine kinase, Hybrid
Bacillus sp. 41-22 · GCF_025809295
ClassHKTypeHybridLength896 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_025809295#LCF45_RS05260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CHASE3HAMPGAFHisKAHATPase_cResponse_reg
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage634 / 896 aa (70.8%)Merged over positioned domains only.
Domain description1 CHASE3,1 HAMP,1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation6 items
2 HAMP#2
184-254 aa · 71 aa · 7.9% of protein
Raw token
HAMP:184:0.000000408:254:71:693 GAF#3
274-410 aa · 137 aa · 15.3% of protein
Raw token
GAF:274:0.00000594:410:140:1334 HisKA#4
496-563 aa · 68 aa · 7.6% of protein
Raw token
HisKA:496:4.19e-17:563:68:645 HATPase_c#5
610-731 aa · 122 aa · 13.6% of protein
Raw token
HATPase_c:610:5.47e-31:731:122:1096 Response_reg#6
778-886 aa · 109 aa · 12.2% of protein
Raw token
Response_reg:778:5.06e-31:886:109:111- Raw architecture: CHASE3:46:3.02e-17:172:135:138#HAMP:184:0.000000408:254:71:69#GAF:274:0.00000594:410:140:133#HisKA:496:4.19e-17:563:68:64#HATPase_c:610:5.47e-31:731:122:109#Response_reg:778:5.06e-31:886:109:111
- Domain description: 1 CHASE3,1 HAMP,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_025809295::NZ_CP084035.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1039438-1042128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCF45_05250RefSeq proteinWP_263894652.1
Context group ID
GCF_025809295::NZ_CP084035.1::G00014Context members
LCF45_RS05260
Partner locus tags
LCF45_RS05260
Partner old locus tags
LCF45_05250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_263894652.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCF45_RS05260Primary locus identifier stored in the genes table.
Old locus tagLCF45_05250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084035.1Sequence record reported by the local genomic context database.
Genomic interval1 039 438-1 042 128 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 039 438-1 042 128 ntGCF_025809295::NZ_CP084035.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025809295::NZ_CP084035.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084035.1All displayed genes belong to this local TCS context.
Neighborhood span1 039 438-1 042 128 nt2 691 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 039 438 nt1 042 128 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LCF45_RS05260GCF_025809295#LCF45_RS05260
HKHybridCurrent focus
1 039 438-1 042 128 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025809295#LCF45_RS05260The current gene is the representative for this cluster.
PFAM architectureCHASE3 + GAF_2 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0414848
Simplified PFAM architecture for HKOC_0414848
PFAM domain coverage: 562 / 896 aa (62.7%)
1 aa896 aa
CHASE3GAF_2HisKAHATPase_cResponse_reg
- Simplified architecture: CHASE3 + GAF_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE3[45-172] | GAF_2[278-411] | HisKA[496-563] | HATPase_c[611-731] | Response_reg[778-888]
- Domain count: 5
- Matched identifier: HKOC_0414848
- Positioned domains: CHASE3 45-172 ; GAF_2 278-411 ; HisKA 496-563 ; HATPase_c 611-731 ; Response_reg 778-888
Cluster members and taxonomy
Representative gene: GCF_025809295#LCF45_RS05260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 876 713 · GCF_025809295
AssemblyASM2580929v1 · Complete Genomehaploid
Genome composition5 262 101 bp · 35,5% GCBacillus sp. 41-22
Signal transduction countsGenes 122 · HK 67 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key